Browse of TCMCG002C18532 protein

CDS

Accession Number	TCMCG002C18532
gbkey	CDS
Protein Id	XP_020100190.1
Location	complement(join(57722..57793,62738..62792,62867..62913,63057..63113,63203..63311,64212..64293,64729..64813,64882..65001,65093..65143,65503..65568,65831..65878,66012..66060,66164..66217,66323..66382,66480..66538,66866..66982,67179..67190))
Gene	LOC109718383
GeneID	109718383
Organism	Ananas comosus

Protein

Length	380aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA371634
db_source	XM_020244601.1
Definition	flap endonuclease 1-A isoform X5 [Ananas comosus]

EGGNOG-MAPPER Annotation

COG_category	L
Description	Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	-
KEGG_rclass	-
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko01000        [VIEW IN KEGG] ko03032        [VIEW IN KEGG] ko03400        [VIEW IN KEGG] ko04147        [VIEW IN KEGG]
KEGG_ko	ko:K04799        [VIEW IN KEGG]
EC	-
KEGG_Pathway	ko03030        [VIEW IN KEGG] ko03410        [VIEW IN KEGG] ko03450        [VIEW IN KEGG] map03030        [VIEW IN KEGG] map03410        [VIEW IN KEGG] map03450        [VIEW IN KEGG]
GOs	GO:0005575        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0005730        [VIEW IN EMBL-EBI] GO:0031974        [VIEW IN EMBL-EBI] GO:0031981        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043228        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0043232        [VIEW IN EMBL-EBI] GO:0043233        [VIEW IN EMBL-EBI] GO:0044422        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044428        [VIEW IN EMBL-EBI] GO:0044446        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0070013        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGGGCATCAAGGGTTTAACGAAGCTGCTCGCGGACAATGCCCCCAAGTCCATGAAGGAGCAGAAATTCGAGAGCTACTTCGGCCGCAAGATTGCCATTGACGCCAGCATGAGCATCTACCAGTTCCTGATTGTGGTGGGAAGGACTGGAATGGAGACTCTAACCAATGAGGCAGGCGAAGTTACAAGTCATTTGCAGGGTATGTTCAACCGGACGATAAGATTGCTAGAGGCTGGAATAAAGCCAGTATATGTTTTTGATGGTCAGCCACCTGATTTGAAGAAACAAGAGCTTGCAAAAAGGTTCTCAAAGAGGGAGGATGCCACCAAGGACTTGTCTACAGCCATTGAGGCTGGTGATAAGGAATCAATTGAGAAGTTTAGCAAAAGGACTGTCAAGGTCACAAAACAACACAATGAAGACTGTAAACGACTCTTAAGACTGATGGGTGTCCCCATAATTGAGGCGCCTTGTGAAGCGGAAGCAGAGTGTGCGGCACTTTGCAAAAGTGATAAGGTGTATGCTGTGGCCTCAGAAGATATGGATTCACTAACTTTTGGTGCTCCAAGGTTTCTTCGCCACTTAATGGATCCAAGCTCAAAAAAGATCCCAGTGATGGAATTTGAAATTGCAAAGGTTTTGGAGGAGCTTGAGTTCACCATGGATCAATTCATCGACTTGTGTATTCTTTGTGGATGTGACTACTGCGATAGTATCAAAGGTATTGGGGGACAAACAGCTCTAAAGCTTATTCGGCAATATGGTTGCATAGAAAATATGCTGGAAAATATTAATAGAGAAAGGTATCAAATACCAGAGGATTGGCCTTATCAAGAAGCTCGACGCTTATTTAAAGAACCTATGGTCTCTGTTGATATTCCAGAACTTAAGTGGACTTCTCCAGATGAGGAAGGTCTTGGAAATTTTTTGGTGAAGGAAAATGGTTTCAATCAGGATCGAGTGACAAAGGCAATAGAAAAGATTAAAGCTGCCAAAAATAAATCTTCCCAAGGGAGACTGGAGTCCTTCTTCAAGCCAGTTGTGAGCACGTCTACGCCTCTTAAACGGAAGGAAACGACTGATAAATCGGCAAAGACAACTTCAAGCAAAAAAGCTAAGCCTGCTGGTGGAAAGAAGAAATAG

Protein:   MGIKGLTKLLADNAPKSMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGQPPDLKKQELAKRFSKREDATKDLSTAIEAGDKESIEKFSKRTVKVTKQHNEDCKRLLRLMGVPIIEAPCEAEAECAALCKSDKVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEIAKVLEELEFTMDQFIDLCILCGCDYCDSIKGIGGQTALKLIRQYGCIENMLENINRERYQIPEDWPYQEARRLFKEPMVSVDIPELKWTSPDEEGLGNFLVKENGFNQDRVTKAIEKIKAAKNKSSQGRLESFFKPVVSTSTPLKRKETTDKSAKTTSSKKAKPAGGKKK